If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ), 'gf_id' => 'HOM05D000715', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000715' ), 'data_identifier' => 'HOM05D000715', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000715', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '808', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42300' => 'bna', 'A04p12380' => 'bna', 'A04p26190' => 'bna', 'A06p20140' => 'bna', 'A06p29140' => 'bna', 'A07p10910' => 'bna', 'A07p20060' => 'bna', 'A07p31550' => 'bna', 'A07p35930' => 'bna', 'A08p25290' => 'bna', 'A08p27490' => 'bna', 'A09p37170' => 'bna', 'A09p40220' => 'bna', 'Aa31LG4G11210' => 'aar', 'Aa31LG4G16290' => 'aar', 'Aa31LG6G6380' => 'aar', 'Aa31LG7G8330' => 'aar', 'Aa31LG9G13910' => 'aar', 'Aa31LG9G16450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3002' => 'aag', 'Actinidia03915' => 'ach', 'Actinidia04884' => 'ach', 'Actinidia12288' => 'ach', 'Actinidia16797' => 'ach', 'Actinidia19037' => 'ach', 'Actinidia31903' => 'ach', 'Actinidia33203' => 'ach', 'Actinidia35003' => 'ach', 'Actinidia35577' => 'ach', 'Actinidia37623' => 'ach', 'Actinidia37825' => 'ach', 'Actinidia38770' => 'ach', 'Actinidia38790' => 'ach', 'Ah.02g113610' => 'amhyb', 'Ah.02g116010' => 'amhyb', 'Ah.02g129620' => 'amhyb', 'Ah.03g134930' => 'amhyb', 'Ah.04g159410' => 'amhyb', 'Ah.09g233570' => 'amhyb', 'Ah.11g048340' => 'amhyb', 'Ah.12g059890' => 'amhyb', 'Ah.13g067880' => 'amhyb', 'Ah.14g087100' => 'amhyb', 'AL1G38900' => 'aly', 'AL1G42870' => 'aly', 'AL2G28710' => 'aly', 'AL4G30030' => 'aly', 'AL5G26730' => 'aly', 'AL7G50650' => 'aly', 'AL8G39310' => 'aly', 'Aqoxy3G03423' => 'aox', 'Aqoxy4G00724' => 'aox', 'Aqoxy4G01274' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02S8F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0M6VMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52XQ2N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.915EMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9V5RCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AVJN5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B68HGA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFF73A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB5SUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCS600' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JRAB6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MQC2P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q28BRX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX7AU9' => 'arhy', 'AT1G26790' => 'ath', 'AT1G29160' => 'ath', 'AT1G69570' => 'ath', 'AT2G34140' => 'ath', 'AT3G47500' => 'ath', 'AT5G39660' => 'ath', 'AT5G62430' => 'ath', 'ATR0068G092' => 'atr', 'ATR0564G304' => 'atr', 'ATR0602G261' => 'atr', 'Atru.chr10.1668' => 'acertr', 'Atru.chr11.1769' => 'acertr', 'Atru.chr2.1539' => 'acertr', 'Atru.chr8.186' => 'acertr', 'AUR62005809' => 'cqu', 'AUR62008425' => 'cqu', 'AUR62014301' => 'cqu', 'AUR62014841' => 'cqu', 'AUR62021670' => 'cqu', 'AUR62027677' => 'cqu', 'AUR62031206' => 'cqu', 'AUR62032799' => 'cqu', 'AUR62034094' => 'cqu', 'AUR62034427' => 'cqu', 'AUR62036527' => 'cqu', 'AUR62039802' => 'cqu', 'BcaB01g00915' => 'bca', 'BcaB02g09646' => 'bca', 'BcaB03g12005' => 'bca', 'BcaB03g12140' => 'bca', 'BcaB03g13902' => 'bca', 'BcaB03g14726' => 'bca', 'BcaB03g14727' => 'bca', 'BcaB03g15481' => 'bca', 'BcaB04g19928' => 'bca', 'BcaB05g21778' => 'bca', 'BcaB06g27356' => 'bca', 'BcaB06g27357' => 'bca', 'BcaB06g28736' => 'bca', 'BcaB07g29834' => 'bca', 'BcaB07g32500' => 'bca', 'BcaC01g00077' => 'bca', 'BcaC01g00078' => 'bca', 'BcaC01g01811' => 'bca', 'BcaC01g02468' => 'bca', 'BcaC02g07788' => 'bca', 'BcaC02g07789' => 'bca', 'BcaC02g07792' => 'bca', 'BcaC03g17264' => 'bca', 'BcaC03g18148' => 'bca', 'BcaC05g26384' => 'bca', 'BcaC05g26385' => 'bca', 'BcaC05g26932' => 'bca', 'BcaC06g35405' => 'bca', 'BcaC07g39276' => 'bca', 'BcaC08g44425' => 'bca', 'BcaC08g45883' => 'bca', 'BcaC08g46398' => 'bca', 'BolC3t18701H' => 'bol', 'BolC3t19812H' => 'bol', 'BolC4t26191H' => 'bol', 'BolC4t27827H' => 'bol', 'BolC5t31149H' => 'bol', 'BolC5t31150H' => 'bol', 'BolC5t31506H' => 'bol', 'BolC6t37075H' => 'bol', 'BolC6t38792H' => 'bol', 'BolC6t39405H' => 'bol', 'BolC7t42150H' => 'bol', 'BolC8t49922H' => 'bol', 'BraA04t16901Z' => 'bra', 'BraA04t18122Z' => 'bra', 'BraA06t25099Z' => 'bra', 'BraA06t25862Z' => 'bra', 'BraA07t28880Z' => 'bra', 'BraA07t29705Z' => 'bra', 'BraA07t30784Z' => 'bra', 'BraA07t31176Z' => 'bra', 'BraA08t34480Z' => 'bra', 'BraA08t34689Z' => 'bra', 'BraA09t39233Z' => 'bra', 'BraA09t39520Z' => 'bra', 'C02p62170' => 'bna', 'C03p64450' => 'bna', 'C03p71670' => 'bna', 'C03p75550' => 'bna', 'C04p46060' => 'bna', 'C04p63570' => 'bna', 'C05p24140' => 'bna', 'C05p24150' => 'bna', 'C05p27850' => 'bna', 'C06p18620' => 'bna', 'C06p36840' => 'bna', 'C06p43300' => 'bna', 'C07p16530' => 'bna', 'C08p22860' => 'bna', 'CAN.G1103.9' => 'can', 'CAN.G1604.2' => 'can', 'CAN.G206.160' => 'can', 'CAN.G370.74' => 'can', 'CAN.G587.2' => 'can', 'CAN.G66.11' => 'can', 'CAN.G837.27' => 'can', 'CANSAT35G2043' => 'cansat', 'CANSAT56G2311' => 'cansat', 'CANSAT56G3649' => 'cansat', 'CANSAT64G2040' => 'cansat', 'CANSAT78G2518' => 'cansat', 'CANSAT80G2880' => 'cansat', 'CARHR025150' => 'chi', 'CARHR028470' => 'chi', 'CARHR062520' => 'chi', 'CARHR128230' => 'chi', 'CARHR156140' => 'chi', 'CARHR262630' => 'chi', 'CARHR276230' => 'chi', 'Carub.0001s2422' => 'cru', 'Carub.0001s2736' => 'cru', 'Carub.0002s1624' => 'cru', 'Carub.0004s1577' => 'cru', 'Carub.0005s1359' => 'cru', 'Carub.0007s3629' => 'cru', 'Carub.0008s2311' => 'cru', 'Ca_00435_v3' => 'car', 'Ca_02906_v3' => 'car', 'Ca_04287_v3' => 'car', 'Ca_04464_v3' => 'car', 'Ca_04817_v3' => 'car', 'Ca_08322_v3' => 'car', 'Ca_18828_v3' => 'car', 'Ca_21816_v3' => 'car', 'Ca_24127_v3' => 'car', 'Ca_27942_v3' => 'car', 'Ca_30087_v3' => 'car', 'CBR_g40868' => 'cbr', 'Cc02_g14960' => 'ccan', 'Cc04_g16510' => 'ccan', 'Cc07_g03470' => 'ccan', 'Cc11_g12870' => 'ccan', 'CDE04G0473' => 'cde', 'CDE04G3782' => 'cde', 'CDE07G0545' => 'cde', 'CDE08G0601' => 'cde', 'CDE08G0718' => 'cde', 'CDE09G0076' => 'cde', 'CDE10G0901' => 'cde', 'Cfa000607' => 'cfa', 'Cfa007571' => 'cfa', 'Cfa008968' => 'cfa', 'Cfa018933' => 'cfa', 'Ciclev10011556m.g' => 'ccl', 'Ciclev10018094m.g' => 'ccl', 'Ciclev10019872m.g' => 'ccl', 'Ciclev10019949m.g' => 'ccl', 'Ciclev10031433m.g' => 'ccl', 'CiPaw.03G025400' => 'cil', 'CiPaw.04G016400' => 'cil', 'CiPaw.05G133500' => 'cil', 'CiPaw.06G086300' => 'cil', 'CiPaw.09G069700' => 'cil', 'CiPaw.09G166200' => 'cil', 'CiPaw.10G058900' => 'cil', 'CiPaw.11G045500' => 'cil', 'CiPaw.13G046800' => 'cil', 'CiPaw.14G037300' => 'cil', 'ClCG01G023730' => 'cla', 'ClCG03G007720' => 'cla', 'ClCG04G012210' => 'cla', 'ClCG05G024190' => 'cla', 'ClCG06G016160' => 'cla', 'ClCG10G015210' => 'cla', 'ClCG10G015930' => 'cla', 'COL.COLO4_08435' => 'col', 'COL.COLO4_08637' => 'col', 'COL.COLO4_13187' => 'col', 'COL.COLO4_20082' => 'col', 'COL.COLO4_22952' => 'col', 'COL.COLO4_31296' => 'col', 'COL.COLO4_37774' => 'col', 'COL.COLO4_37775' => 'col', 'Cpa.g.sc111.11' => 'cpa', 'Cpa.g.sc128.41' => 'cpa', 'Cpa.g.sc161.44' => 'cpa', 'Cpa.g.sc7.69' => 'cpa', 'Cre12.g521150' => 'cre', 'CsaV3_1G002390' => 'csa', 'CsaV3_1G005540' => 'csa', 'CsaV3_1G033350' => 'csa', 'CsaV3_3G040560' => 'csa', 'CsaV3_3G041310' => 'csa', 'CsaV3_5G032810' => 'csa', 'CsaV3_6G050890' => 'csa', 'CSS0004360' => 'camsi', 'CSS0006959' => 'camsi', 'CSS0012691' => 'camsi', 'CSS0017752' => 'camsi', 'CSS0021267' => 'camsi', 'CSS0026500' => 'camsi', 'CSS0027296' => 'camsi', 'CSS0034004' => 'camsi', 'CSS0038715' => 'camsi', 'CSS0040296' => 'camsi', 'CSS0040871' => 'camsi', 'CSS0048616' => 'camsi', 'DCAR_004007' => 'dca', 'DCAR_005559' => 'dca', 'DCAR_007160' => 'dca', 'DCAR_013493' => 'dca', 'DCAR_026058' => 'dca', 'DCAR_027420' => 'dca', 'DCAR_028002' => 'dca', 'DCAR_031013' => 'dca', 'DCAR_031326' => 'dca', 'Dinv04774' => 'din', 'Dinv10640' => 'din', 'Dinv11522' => 'din', 'Dinv13795' => 'din', 'Dinv16658' => 'din', 'Dinv25034' => 'din', 'Dinv33771' => 'din', 'Dinv34143' => 'din', 'Dinv38720' => 'din', 'Dinv40675' => 'din', 'Duzib068G0179' => 'dzi', 'Duzib106G1781' => 'dzi', 'Duzib128G0859' => 'dzi', 'Duzib147G1585' => 'dzi', 'Duzib160G0029' => 'dzi', 'Duzib177G0336' => 'dzi', 'Duzib192G0384' => 'dzi', 'Duzib192G0959' => 'dzi', 'Duzib205G1231' => 'dzi', 'Duzib235G0220' => 'dzi', 'Duzib251G0890' => 'dzi', 'Duzib264G0349' => 'dzi', 'ECA232G3791' => 'eca', 'ECA233G1744' => 'eca', 'ECA234G0696' => 'eca', 'ECA238G0136' => 'eca', 'ECA246G3081' => 'eca', 'ECA247G0309' => 'eca', 'EL10Ac2g02993' => 'bvu', 'EL10Ac5g11029' => 'bvu', 'EL10Ac5g11690' => 'bvu', 'EL10Ac6g13222' => 'bvu', 'EL10Ac8g20598' => 'bvu', 'Eucgr.B00515' => 'egr', 'Eucgr.D00490' => 'egr', 'Eucgr.G02493' => 'egr', 'Eucgr.I01947' => 'egr', 'Eucgr.K01541' => 'egr', 'Eucgr.K02480' => 'egr', 'FAN02G2712' => 'fan', 'FAN05G1602' => 'fan', 'FAN05G2059' => 'fan', 'FAN07G0856' => 'fan', 'FAN08G0828' => 'fan', 'FAN09G4386' => 'fan', 'FAN11G0880' => 'fan', 'FAN12G2237' => 'fan', 'FAN13G2004' => 'fan', 'FAN14G0745' => 'fan', 'FAN16G1143' => 'fan', 'FAN17G2154' => 'fan', 'FAN18G2770' => 'fan', 'FAN21G1926' => 'fan', 'FAN22G0153' => 'fan', 'FAN25G0334' => 'fan', 'FvH4_3g07790' => 'fve', 'FvH4_4g31210' => 'fve', 'FvH4_5g14830' => 'fve', 'FvH4_6g48270' => 'fve', 'Glyma.01G049400' => 'gma', 'Glyma.02G108600' => 'gma', 'Glyma.03G007900' => 'gma', 'Glyma.03G007950' => 'gma', 'Glyma.04G168300' => 'gma', 'Glyma.05G025900' => 'gma', 'Glyma.05G158200' => 'gma', 'Glyma.06G194800' => 'gma', 'Glyma.07G229600' => 'gma', 'Glyma.08G115900' => 'gma', 'Glyma.08G228900' => 'gma', 'Glyma.09G237000' => 'gma', 'Glyma.13G062500' => 'gma', 'Glyma.13G230200' => 'gma', 'Glyma.15G082400' => 'gma', 'Glyma.15G215500' => 'gma', 'Glyma.17G101000' => 'gma', 'Glyma.18G260500' => 'gma', 'Glyma.19G023200' => 'gma', 'Glyma.19G118000' => 'gma', 'Glyma.20G035200' => 'gma', 'Gohir.A04G147100' => 'ghi', 'Gohir.A05G154900' => 'ghi', 'Gohir.A06G131000' => 'ghi', 'Gohir.A08G220600' => 'ghi', 'Gohir.A09G014900' => 'ghi', 'Gohir.A10G037400' => 'ghi', 'Gohir.A11G070000' => 'ghi', 'Gohir.A11G227600' => 'ghi', 'Gohir.A12G164400' => 'ghi', 'Gohir.A12G178100' => 'ghi', 'Gohir.D04G191500' => 'ghi', 'Gohir.D05G157900' => 'ghi', 'Gohir.D06G137100' => 'ghi', 'Gohir.D08G237200' => 'ghi', 'Gohir.D09G013450' => 'ghi', 'Gohir.D10G038200' => 'ghi', 'Gohir.D11G073900' => 'ghi', 'Gohir.D11G240000' => 'ghi', 'Gohir.D11G240100' => 'ghi', 'Gohir.D12G167500' => 'ghi', 'Gohir.D12G180500' => 'ghi', 'Gorai.004G252700' => 'gra', 'Gorai.006G015500' => 'gra', 'Gorai.007G079300' => 'gra', 'Gorai.007G253500' => 'gra', 'Gorai.008G180400' => 'gra', 'Gorai.008G193700' => 'gra', 'Gorai.009G162500' => 'gra', 'Gorai.010G159300' => 'gra', 'Gorai.011G040200' => 'gra', 'Gorai.012G186900' => 'gra', 'GSVIVG01007992001' => 'vvi', 'GSVIVG01011433001' => 'vvi', 'GSVIVG01019969001' => 'vvi', 'GSVIVG01021212001' => 'vvi', 'GSVIVG01029943001' => 'vvi', 'HanXRQChr03g0092101' => 'han', 'HanXRQChr05g0155931' => 'han', 'HanXRQChr07g0199341' => 'han', 'HanXRQChr08g0210891' => 'han', 'HanXRQChr09g0270661' => 'han', 'HanXRQChr14g0449741' => 'han', 'HanXRQChr16g0518851' => 'han', 'Haze_03411' => 'cav', 'Haze_06231' => 'cav', 'Haze_07317' => 'cav', 'Haze_11999' => 'cav', 'Haze_14515' => 'cav', 'Haze_20398' => 'cav', 'Hma1.2p1_0075F.1_g039360' => 'hma', 'Hma1.2p1_0215F.1_g090840' => 'hma', 'Hma1.2p1_0795F.1_g218950' => 'hma', 'Hma1.2p1_1591F.1_g292500' => 'hma', 'Hma1.2p1_1725F.1_g299440' => 'hma', 'Hma1.2p1_1936F.1_g308240' => 'hma', 'Hma1.2p1_1992F.1_g310260' => 'hma', 'Hma1.2p1_2779F.1_g328330' => 'hma', 'HPP92_001710' => 'vpl', 'HPP92_004331' => 'vpl', 'HPP92_008020' => 'vpl', 'HPP92_016260' => 'vpl', 'HPP92_019769' => 'vpl', 'HPP92_023434' => 'vpl', 'HPP92_027914' => 'vpl', 'HPP92_028189' => 'vpl', 'Hund02642' => 'sun', 'Hund06825' => 'sun', 'Hund15076' => 'sun', 'Lalb_Chr02g0157461' => 'lal', 'Lalb_Chr02g0159311' => 'lal', 'Lalb_Chr06g0175291' => 'lal', 'Lalb_Chr07g0186461' => 'lal', 'Lalb_Chr08g0235691' => 'lal', 'Lalb_Chr10g0098311' => 'lal', 'Lalb_Chr12g0205171' => 'lal', 'Lalb_Chr13g0303181' => 'lal', 'Lalb_Chr17g0340791' => 'lal', 'Lalb_Chr19g0132491' => 'lal', 'Lalb_Chr20g0117441' => 'lal', 'Lalb_Chr21g0318671' => 'lal', 'Lj1g0017126' => 'lja', 'Lj1g0017181' => 'lja', 'Lj1g0022885' => 'lja', 'Lj1P1192T40' => 'lonja', 'Lj2g0003484' => 'lja', 'Lj2g0006520' => 'lja', 'Lj2P298T33' => 'lonja', 'Lj3A1036T38' => 'lonja', 'Lj3g0015006' => 'lja', 'Lj4A110T79' => 'lonja', 'Lj4C56T22' => 'lonja', 'Lj4g0015965' => 'lja', 'Lj4g0027706' => 'lja', 'Lj5A110T126' => 'lonja', 'Lj6g0004923' => 'lja', 'Lj9A464T86' => 'lonja', 'Lju41C11G7' => 'lonja', 'Lsat_1_v5_gn_1_14020' => 'lsa', 'Lsat_1_v5_gn_2_88380' => 'lsa', 'Lsat_1_v5_gn_4_108141' => 'lsa', 'Lsat_1_v5_gn_4_49661' => 'lsa', 'Lsat_1_v5_gn_5_19880' => 'lsa', 'Lsat_1_v5_gn_8_51160' => 'lsa', 'Manes.01G035000' => 'mes', 'Manes.01G092100' => 'mes', 'Manes.02G047133' => 'mes', 'Manes.05G103100' => 'mes', 'Manes.06G091600' => 'mes', 'Manes.08G152100' => 'mes', 'Manes.09G136300' => 'mes', 'Manes.14G079000' => 'mes', 'Manes.16G039600' => 'mes', 'Manes.17G055700' => 'mes', 'Mapoly0001s0192' => 'mpo', 'MBI02_g42048_MAGBIO' => 'mbi', 'MBI05_g10777_MAGBIO' => 'mbi', 'MBI07_g03184_MAGBIO' => 'mbi', 'MBI13_g14162_MAGBIO' => 'mbi', 'MBI19_g09310_MAGBIO' => 'mbi', 'MCO03G067' => 'mco', 'MD00G1125100' => 'mdo', 'MD05G1301100' => 'mdo', 'MD06G1194500' => 'mdo', 'MD07G1057700' => 'mdo', 'MD10G1280000' => 'mdo', 'MD13G1070600' => 'mdo', 'MD14G1201600' => 'mdo', 'MD16G1071400' => 'mdo', 'Medtr2g016030' => 'mtr', 'Medtr3g118510' => 'mtr', 'Medtr3g435480' => 'mtr', 'Medtr4g082060' => 'mtr', 'Medtr5g041380' => 'mtr', 'Medtr5g041400' => 'mtr', 'Medtr5g041420' => 'mtr', 'Medtr5g041530' => 'mtr', 'Medtr6g012450' => 'mtr', 'Medtr6g027450' => 'mtr', 'Medtr6g027460' => 'mtr', 'Medtr7g010950' => 'mtr', 'Medtr7g086780' => 'mtr', 'Medtr8g044220' => 'mtr', 'MELO3C000201.2' => 'cme', 'MELO3C001987.2' => 'cme', 'MELO3C002649.2' => 'cme', 'MELO3C009788.2' => 'cme', 'MELO3C009859.2' => 'cme', 'MELO3C012104.2' => 'cme', 'MELO3C017178.2' => 'cme', 'Migut.D01811' => 'egut', 'Migut.K01320' => 'egut', 'Migut.L01278' => 'egut', 'Migut.M01039' => 'egut', 'MSTRG.13219' => 'ama', 'MSTRG.16150' => 'ama', 'MSTRG.23014' => 'ama', 'MSTRG.23929' => 'ama', 'MSTRG.3331' => 'ama', 'MSTRG.4433' => 'ama', 'MSTRG.708' => 'ama', 'MSTRG.7406' => 'ama', 'MSTRG.9626' => 'ama', 'Nitab4.5_0000014g0070' => 'nta', 'Nitab4.5_0000040g0250' => 'nta', 'Nitab4.5_0000121g0140' => 'nta', 'Nitab4.5_0000274g0250' => 'nta', 'Nitab4.5_0000280g0270' => 'nta', 'Nitab4.5_0000568g0020' => 'nta', 'Nitab4.5_0000605g0210' => 'nta', 'Nitab4.5_0001128g0070' => 'nta', 'Nitab4.5_0001923g0010' => 'nta', 'Nitab4.5_0002076g0040' => 'nta', 'Nitab4.5_0002980g0040' => 'nta', 'Nitab4.5_0003995g0040' => 'nta', 'Nitab4.5_0004286g0050' => 'nta', 'Nitab4.5_0005170g0040' => 'nta', 'Nitab4.5_0005170g0050' => 'nta', 'Nitab4.5_0007189g0040' => 'nta', 'Nitab4.5_0007740g0010' => 'nta', 'Nitab4.5_0008692g0010' => 'nta', 'Nitab4.5_0011320g0010' => 'nta', 'Nn1g04412' => 'nnu', 'Nn1g09129' => 'nnu', 'Nn2g14573' => 'nnu', 'Nn3g17266' => 'nnu', 'Nn4g23198' => 'nnu', 'Oeu002092.1' => 'oeu', 'Oeu003911.1' => 'oeu', 'Oeu015423.1' => 'oeu', 'Oeu019467.1' => 'oeu', 'Oeu020371.1' => 'oeu', 'Oeu022766.1' => 'oeu', 'Oeu039921.1' => 'oeu', 'Oeu041729.1' => 'oeu', 'Oeu047006.1' => 'oeu', 'Oeu047289.1' => 'oeu', 'Oeu054867.1' => 'oeu', 'Os01g0264000' => 'osa', 'Os01g0277500' => 'osa', 'Os01g0673700' => 'osa', 'Os01g0758200' => 'osa', 'Os03g0169600' => 'osa', 'Os07g0685000' => 'osa', 'Os10g0406300' => 'osa', 'Os12g0590700' => 'osa', 'Peaxi162Scf00013g00429' => 'pax', 'Peaxi162Scf00129g10011' => 'pax', 'Peaxi162Scf00222g00057' => 'pax', 'Peaxi162Scf00274g00447' => 'pax', 'Peaxi162Scf00778g00021' => 'pax', 'PGR004G1428' => 'pgr', 'PGR004G1734' => 'pgr', 'PGR042G3605' => 'pgr', 'PGR044G1752' => 'pgr', 'PGR083G1369' => 'pgr', 'PGR119G1540' => 'pgr', 'PGR142G3784' => 'pgr', 'PGSC0003DMG400001330' => 'stu', 'PGSC0003DMG400018408' => 'stu', 'PGSC0003DMG400019528' => 'stu', 'PGSC0003DMG400025129' => 'stu', 'PGSC0003DMG400033046' => 'stu', 'PGSC0003DMG400037029' => 'stu', 'Phvul.001G106400' => 'pvu', 'Phvul.002G084000' => 'pvu', 'Phvul.002G170600' => 'pvu', 'Phvul.002G238400' => 'pvu', 'Phvul.003G189300' => 'pvu', 'Phvul.003G275800' => 'pvu', 'Phvul.006G176400' => 'pvu', 'Phvul.008G037000' => 'pvu', 'Phvul.009G186600' => 'pvu', 'Potri.004G056900' => 'ptr', 'Potri.004G121800' => 'ptr', 'Potri.008G087800' => 'ptr', 'Potri.010G167600' => 'ptr', 'Potri.011G065900' => 'ptr', 'Potri.013G066700' => 'ptr', 'Potri.017G084600' => 'ptr', 'Potri.019G040700' => 'ptr', 'Pp3c12_22390' => 'ppa', 'Pp3c13_2000' => 'ppa', 'Pp3c13_21190' => 'ppa', 'Pp3c14_24190' => 'ppa', 'Pp3c15_3180' => 'ppa', 'Pp3c16_6460' => 'ppa', 'Pp3c17_23300' => 'ppa', 'Pp3c17_7930' => 'ppa', 'Pp3c24_4310' => 'ppa', 'Pp3c26_1490' => 'ppa', 'Pp3c3_26370' => 'ppa', 'Pp3c3_950' => 'ppa', 'Pp3c4_850' => 'ppa', 'Pp3c5_14440' => 'ppa', 'Pp3c6_13355' => 'ppa', 'Pp3c6_13360' => 'ppa', 'Pp3c9_4910' => 'ppa', 'PRCOL_00003910' => 'pco', 'Prupe.1G276000' => 'ppe', 'Prupe.2G063800' => 'ppe', 'Prupe.3G266200' => 'ppe', 'Prupe.4G061400' => 'ppe', 'Prupe.5G194600' => 'ppe', 'Prupe.7G016400' => 'ppe', 'Psat1g073000' => 'psa', 'Psat1g088840' => 'psa', 'Psat1g088880' => 'psa', 'Psat1g197640' => 'psa', 'Psat2g118080' => 'psa', 'Psat2g118560' => 'psa', 'Psat2g118600' => 'psa', 'Psat2g118680' => 'psa', 'Psat3g086000' => 'psa', 'Psat3g197760' => 'psa', 'Psat4g143120' => 'psa', 'Psat7g135960' => 'psa', 'PSO017G6310' => 'pso', 'PSO229G0165' => 'pso', 'PSO339G1673' => 'pso', 'PSO384G4300' => 'pso', 'PSO478G3373' => 'pso', 'PSO675G2684' => 'pso', 'QL02p082478' => 'qlo', 'QL03p068694' => 'qlo', 'QL04p050250' => 'qlo', 'QL05p047095' => 'qlo', 'QL07p017106' => 'qlo', 'QL10p017159' => 'qlo', 'RcHm_v2.0_Chr2g0167771' => 'rch', 'RcHm_v2.0_Chr4g0439611' => 'rch', 'RcHm_v2.0_Chr5g0010791' => 'rch', 'RcHm_v2.0_Chr7g0181561' => 'rch', 'Rhsim02G0142700' => 'rsi', 'Rhsim03G0049100' => 'rsi', 'Rhsim08G0069900' => 'rsi', 'Rhsim08G0154300' => 'rsi', 'Rhsim10G0038600' => 'rsi', 'Rhsim12G0064300' => 'rsi', 'Rhsim13G0189900' => 'rsi', 'Sabra04G0036800' => 'sbr', 'Sabra04G0091000' => 'sbr', 'Sabra08G0065600' => 'sbr', 'Sabra10G0127400' => 'sbr', 'Sabra11G0047500' => 'sbr', 'Sabra13G0058200' => 'sbr', 'Sabra17G0074500' => 'sbr', 'Sabra19G0050900' => 'sbr', 'SalBow1G5717' => 'sbo', 'SalBow1G6393' => 'sbo', 'SalBow2G2111' => 'sbo', 'SalBow5G2876' => 'sbo', 'Sc04g0002690' => 'sci', 'Sc05g0007100' => 'sci', 'Sc09g0004880' => 'sci', 'Sc10g0003530' => 'sci', 'Sc11g0002010' => 'sci', 'Sc11g0007130' => 'sci', 'Sc17g0005740' => 'sci', 'Sed0003311' => 'sed', 'Sed0004076' => 'sed', 'Sed0004715' => 'sed', 'Sed0005974' => 'sed', 'Sed0011956' => 'sed', 'Sed0015112' => 'sed', 'Sed0016004' => 'sed', 'Sed0018148' => 'sed', 'Sed0019073' => 'sed', 'Sed0023411' => 'sed', 'Sed0026836' => 'sed', 'Sed0027222' => 'sed', 'SEGI_02818' => 'sgi', 'SEGI_04280' => 'sgi', 'SEGI_11524' => 'sgi', 'SEGI_17275' => 'sgi', 'SEGI_24199' => 'sgi', 'SEGI_26073' => 'sgi', 'SEGI_35982' => 'sgi', 'SGA_v2.0_scaffold114G31909' => 'sas', 'SGA_v2.0_scaffold30G12539' => 'sas', 'SGA_v2.0_scaffold413G51191' => 'sas', 'SGA_v2.0_scaffold4G02437' => 'sas', 'SGA_v2.0_scaffold56G20002' => 'sas', 'SHI14902' => 'shi', 'SMO119G0382' => 'smo', 'SMO332G0009' => 'smo', 'SMO364G0801' => 'smo', 'Solyc02g067230.3' => 'sly', 'Solyc02g076850.2' => 'sly', 'Solyc02g088070.3' => 'sly', 'Solyc03g115940.4' => 'sly', 'Solyc05g007880.4' => 'sly', 'Solyc06g069760.3' => 'sly', 'Sopen02g016410' => 'spe', 'Sopen02g021750' => 'spe', 'Sopen02g032780' => 'spe', 'Sopen03g034940' => 'spe', 'Sopen05g003730' => 'spe', 'Sopen06g027050' => 'spe', 'Sp1g22010' => 'spa', 'Sp1g25090' => 'spa', 'Sp2g25620' => 'spa', 'Sp5g14380' => 'spa', 'Sp5g24690' => 'spa', 'Sp7g02350' => 'spa', 'TAR371G0107' => 'tar', 'TAR371G0559' => 'tar', 'TAR622G0103' => 'tar', 'TAR623G0052' => 'tar', 'TAR627G0429' => 'tar', 'TAR629G2410' => 'tar', 'TAR629G3217' => 'tar', 'TAR633G0633' => 'tar', 'THA.LOC104814255' => 'tha', 'THA.LOC104818258' => 'tha', 'THA.LOC104820594' => 'tha', 'THA.LOC104821387' => 'tha', 'THA.LOC104821418' => 'tha', 'THA.LOC104822051' => 'tha', 'THA.LOC104822909' => 'tha', 'THA.LOC104823774' => 'tha', 'Thecc.02G344400' => 'tca', 'Thecc.03G090000' => 'tca', 'Thecc.03G090100' => 'tca', 'Thecc.04G083700' => 'tca', 'Thecc.04G083800' => 'tca', 'Thecc.05G240700' => 'tca', 'Thecc.06G170700' => 'tca', 'Thhalv10004655m.g' => 'esa', 'Thhalv10007936m.g' => 'esa', 'Thhalv10008914m.g' => 'esa', 'Thhalv10010412m.g' => 'esa', 'Thhalv10017316m.g' => 'esa', 'Thhalv10018679m.g' => 'esa', 'Thhalv10027747m.g' => 'esa', 'TPR.G14600' => 'tpr', 'TPR.G32537' => 'tpr', 'TPR.G33610' => 'tpr', 'TPR.G34025' => 'tpr', 'TPR.G34789' => 'tpr', 'TPR.G39203' => 'tpr', 'TPR.G39254' => 'tpr', 'TPR.G8806' => 'tpr', 'TWI15G1180' => 'twi', 'TWI32G0507' => 'twi', 'TWI32G1318' => 'twi', 'TWI34G0286' => 'twi', 'TWI34G0912' => 'twi', 'TWI38G1367' => 'twi', 'TWI38G1932' => 'twi', 'TWI60G1310' => 'twi', 'TWI60G1576' => 'twi', 'TWI81G0986' => 'twi', 'unitig_0.g2632' => 'ugi', 'unitig_0.g714' => 'ugi', 'unitig_26.g10299' => 'ugi', 'unitig_32.g11777' => 'ugi', 'unitig_37.g12728' => 'ugi', 'unitig_46.g18461' => 'ugi', 'unitig_748.g7263' => 'ugi', 'unitig_748.g8614' => 'ugi', 'unitig_749.g13226' => 'ugi', 'unitig_750.g28504' => 'ugi', 'vmacro17536' => 'vma', 'vmacro18190' => 'vma', 'VMungo0251G1572' => 'vmu', 'VMungo0251G1692' => 'vmu', 'VMungo0251G2106' => 'vmu', 'VMungo0464G1030' => 'vmu', 'VMungo0540G0899' => 'vmu', 'VMungo1215G0120' => 'vmu', 'VMungo1215G3254' => 'vmu', 'VMungo1309G1521' => 'vmu', 'VMungo1383G0234' => 'vmu', 'VMungo1383G2512' => 'vmu', 'Zm00001eb005380' => 'zma', 'Zm00001eb033670' => 'zma', 'Zm00001eb048370' => 'zma', 'Zm00001eb128310' => 'zma', 'Zm00001eb128930' => 'zma', 'Zm00001eb152630' => 'zma', 'Zm00001eb157100' => 'zma', 'Zm00001eb223240' => 'zma', 'Zm00001eb292790' => 'zma', 'Zm00001eb315950' => 'zma', 'Zm00001eb331000' => 'zma', 'Zm00001eb353140' => 'zma', 'Zm00001eb360090' => 'zma', 'Zm00001eb370600' => 'zma' ) $gf_id = 'HOM05D000715' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000715' ) $data_identifier = 'HOM05D000715' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 10, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 21, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 12, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 14, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 17, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 2, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1